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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
ChIP-seq
Assay category
544
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
330
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
55
RNA binding protein
42
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
311
November, 2017
63
December, 2017
50
May, 2020
48
August, 2017
45
November, 2018
22
August, 2021
5
October, 2019
Available data
502
bam
444
fastq
424
bigWig
405
bed narrowPeak
344
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
544
Homo sapiens
Biosample type
370
cell line
155
tissue
15
in vitro differentiated cells
4
primary cell
Organ
544
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
544
AMP
Genome assembly (visualization)
421
hg19
354
GRCh38
Lab
526
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
27
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
544 results
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Clear Filters
ChIP-seq
cell line
HepG2
370
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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