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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
9
DNase-seq
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
66
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
60
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
670
February, 2021
402
November, 2017
401
August, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
106
February, 2023
96
July, 2019
94
December, 2017
80
April, 2019
77
November, 2018
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
77
fastq
76
bam
69
bed narrowPeak
69
bigBed narrowPeak
69
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
77
Homo sapiens
Biosample type
56
cell line
20
tissue
1
primary cell
Organ
48
liver
15
blood
15
bodily fluid
7
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
77
AMP
Genome assembly (visualization)
68
GRCh38
67
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
assay_title!
WGBS
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
41
GM12878
15
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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