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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
74
Transcription
Date released
37
July, 2018
33
April, 2018
3
August, 2018
1
June, 2018
1
March, 2020
Available data
75
tsv
74
bam
74
bigWig
69
fastq
Organism
75
Homo sapiens
Biosample type
74
primary cell
1
tissue
Organ
96
heart
75
pancreas
70
epithelium
66
kidney
10
lung
9
connective tissue
7
blood vessel
7
vasculature
5
brain
4
eye
4
liver
2
adipose tissue
2
artery
2
intestine
2
musculature of body
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
75
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
75 results
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single cell RNA-seq
pCHi-C
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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tissue
pancreas
1
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