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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
WGBS
Assay category
96
Transcription
21
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
3
February, 2020
2
February, 2021
2
July, 2019
2
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
20
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
125
Homo sapiens
Biosample type
120
tissue
3
primary cell
2
cell line
Organ
264
pancreas
254
liver
183
epithelium
149
kidney
125
heart
114
connective tissue
93
bone element
69
brain
63
adipose tissue
55
eye
44
vasculature
43
musculature of body
42
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
125
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
assembly!
GRCh38
assay_title!
WGBS
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
tissue
heart left ventricle
18
7
1
1
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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