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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
2
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
Available data
21
fastq
19
bam
7
tagAlign
3
tsv
1
bedpe bed3+
Organism
62
Homo sapiens
Biosample type
62
tissue
1
in vitro differentiated cells
Organ
272
pancreas
197
epithelium
161
liver
143
kidney
121
heart
92
connective tissue
89
bone element
63
adipose tissue
58
brain
34
blood vessel
34
vasculature
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
hg19
GRCh38
Lab
63
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
assembly!
GRCh38
hg19
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
in vitro differentiated cells
white fat cell
1
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