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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
1
FAIRE-seq
Assay category
32
DNA binding
1
DNA accessibility
Target of assay
27
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
12
August, 2017
9
October, 2019
3
December, 2017
2
June, 2019
2
November, 2017
2
November, 2019
1
August, 2021
1
May, 2019
1
May, 2021
Available data
80
zippedFastqFolder
76
fastq
33
bam
13
bed narrowPeak
10
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bigBed narrowPeak
1
tar
Organism
33
Homo sapiens
Biosample type
27
primary cell
4
in vitro differentiated cells
2
cell line
Organ
148
liver
68
pancreas
33
epithelium
29
vasculature
28
blood vessel
28
brain
28
connective tissue
20
heart
19
adipose tissue
18
limb
14
kidney
11
nerve
9
artery
8
spleen
8
vein
7
embryo
6
blood
6
bodily fluid
4
musculature of body
1
eye
Project
33
AMP
Genome assembly (visualization)
GRCh38
283
hg19
Lab
33
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
7
1
pancreatic alpha cell
6
pancreatic beta cell
6
epithelial cell of proximal tubule
2
brain microvascular endothelial cell
1
+ See 4 more…
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
cell line
EndoC_BH1
2
See all biosamples
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