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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ATAC-seq
33
ChIP-seq
16
pCHi-C
3
Hi-C
Assay category
179
Transcription
95
DNA accessibility
47
DNA methylation
33
DNA binding
3
3D chromatin structure
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
134
May, 2022
76
February, 2023
56
September, 2020
51
May, 2021
45
February, 2021
8
January, 2021
3
October, 2022
Available data
159
fastq
153
zippedFastqFolder
35
bigWig
30
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
373
Homo sapiens
Biosample type
373
primary cell
234
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
142
epithelium
142
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
314
HPAP
35
AMP
24
T1D
Genome assembly (visualization)
218
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
30
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
assembly!
GRCh38
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
373 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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