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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
60
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
2
February, 2021
Available data
95
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
202
Homo sapiens
Biosample type
197
tissue
3
primary cell
2
cell line
Organ
287
pancreas
223
kidney
213
epithelium
202
heart
164
liver
120
brain
91
connective tissue
88
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
26
limb
23
eye
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
202
AMP
Genome assembly (visualization)
266
GRCh38
hg19
Lab
162
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
assembly!
hg19
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
heart right ventricle
17
2
2
right cardiac atrium
18
1
1
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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