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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
21
ChIP-seq
4
Hi-C
4
total RNA-seq
3
single cell RNA-seq
2
RRBS
1
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
21
DNA binding
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
15
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
35
February, 2023
11
August, 2017
5
July, 2019
5
October, 2019
4
February, 2020
3
May, 2019
2
August, 2021
2
February, 2021
2
June, 2019
1
March, 2020
1
May, 2022
Available data
35
bed narrowPeak
13
bam
7
tsv
4
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
71
Homo sapiens
Biosample type
67
tissue
2
cell line
2
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
181
GRCh38
hg19
Lab
71
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
assembly!
hg19
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
skeletal muscle tissue
9
1
2
tibial artery
5
1
gastrocnemius medialis
4
1
muscle of leg
1
1
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cell line
smooth muscle cell of the coronary artery
2
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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