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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
Target of assay
29
transcription factor
22
histone
22
histone modification
14
narrow histone mark
8
broad histone mark
1
RNA binding protein
1
recombinant protein
Date released
39
August, 2017
September, 2018
6
November, 2017
4
October, 2017
1
December, 2017
1
November, 2018
Available data
51
fastq
50
bam
48
bigWig
14
bed bed3+
10
bed narrowPeak
9
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
51
Homo sapiens
Biosample type
26
tissue
12
primary cell
7
cell line
6
in vitro differentiated cells
Organ
22
pancreas
17
connective tissue
12
adipose tissue
7
liver
4
brain
1
embryo
Project
51
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
51
missing controlled_by
Audit category:
inconsistent control run_type
5
inconsistent control read length
audit.WARNING.category!
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
10
brain
4
primary cell
pancreatic endocrine cell
12
cell line
HepG2
7
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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