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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
30
histone
30
histone modification
18
transcription factor
broad histone mark
15
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
12
August, 2017
12
November, 2017
6
December, 2017
1
February, 2018
1
November, 2018
1
October, 2018
Available data
33
bam
33
bigWig
33
fastq
32
bed narrowPeak
15
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
5
tagAlign
Organism
33
Homo sapiens
Biosample type
13
cell line
12
in vitro differentiated cells
4
primary cell
3
tissue
1
stem cell
Organ
14
liver
6
connective tissue
6
pancreas
5
epithelium
2
embryo
Project
33
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
41
inconsistent control read length
inconsistent control run_type
2
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
13
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
tissue
body of pancreas
1
liver
1
pancreas
1
stem cell
hESC
1
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