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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
30
histone
30
histone modification
18
transcription factor
15
broad histone mark
15
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
6
August, 2017
5
November, 2017
2
December, 2017
1
February, 2018
1
October, 2018
Available data
15
bam
15
bigWig
15
fastq
14
bed narrowPeak
7
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
5
tagAlign
1
bed bed3+
Organism
15
Homo sapiens
Biosample type
5
cell line
4
primary cell
3
tissue
2
in vitro differentiated cells
1
stem cell
Organ
6
liver
6
pancreas
5
epithelium
1
embryo
Project
15
AMP
Genome assembly (visualization)
15
hg19
14
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
16
inconsistent control read length
1
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
cell line
HepG2
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
tissue
body of pancreas
1
liver
1
pancreas
1
in vitro differentiated cells
Hepatic endoderm
1
definitive endodermal cell
1
stem cell
hESC
1
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