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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
225
DNA binding
69
DNA accessibility
Target of assay
215
histone
215
histone modification
112
broad histone mark
103
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
32
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
612
bigWig
608
bam
408
fastq
294
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
294
Homo sapiens
Biosample type
944
tissue
396
cell line
294
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
210
AMP
84
T1D
Genome assembly (visualization)
287
hg19
260
GRCh38
Lab
180
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
13
2
pancreatic beta cell
7
7
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