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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
DNase-seq
Assay category
12
DNA binding
10
DNA accessibility
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
12
June, 2019
6
October, 2019
4
May, 2019
Available data
31
bam
28
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
22
Homo sapiens
Biosample type
153
tissue
22
primary cell
8
cell line
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
22
AMP
Genome assembly (visualization)
22
GRCh38
16
hg19
Lab
22
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
primary cell
epithelial cell of proximal tubule
8
1
kidney epithelial cell
4
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
glomerular endothelial cell
1
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