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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
215
DNA binding
69
DNA accessibility
Target of assay
215
histone
215
histone modification
112
broad histone mark
103
narrow histone mark
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
43
June, 2019
30
August, 2017
21
October, 2019
5
September, 2017
3
August, 2021
3
May, 2019
3
November, 2017
2
November, 2020
1
February, 2021
Available data
602
bigWig
598
bam
403
fastq
284
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
284
Homo sapiens
Biosample type
958
tissue
336
cell line
284
primary cell
126
in vitro differentiated cells
2
stem cell
Organ
101
epithelium
68
pancreas
20
kidney
19
vasculature
16
blood vessel
16
connective tissue
13
vein
9
musculature of body
8
brain
6
liver
5
heart
2
eye
Project
200
AMP
84
T1D
Genome assembly (visualization)
277
hg19
251
GRCh38
Lab
170
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
284 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
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