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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
405
DNA binding
28
DNA accessibility
Target of assay
321
transcription factor
81
histone modification
81
recombinant protein
80
histone
53
RNA binding protein
51
narrow histone mark
29
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
245
November, 2017
50
December, 2017
47
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
673
bam
614
bigWig
457
fastq
433
bed narrowPeak
350
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
433
Homo sapiens
Biosample type
300
cell line
113
tissue
14
in vitro differentiated cells
6
primary cell
Organ
433
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
433
AMP
Genome assembly (visualization)
429
hg19
361
GRCh38
Lab
399
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
25
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
433 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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