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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
3
pCHi-C
Assay category
15
3D chromatin structure
Date released
12
March, 2020
3
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
2809
bam
2646
bigWig
1481
tsv
1412
bed narrowPeak
930
fastq
686
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
18
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
cell line
1
primary cell
Organ
3
heart
3
pancreas
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
1
vein
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
17
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
biosample_type!
cell line
files.file_type!
cool
BIOSAMPLE
ASSAY
18 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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