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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
Assay category
4
3D chromatin structure
Date released
3
October, 2022
1
November, 2019
Available data
260
bam
258
fastq
250
bigWig
142
tsv
91
bed narrowPeak
80
zippedFastqFolder
29
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
4
Homo sapiens
Biosample type
3
primary cell
tissue
1
cell line
Organ
5
epithelium
4
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
3
HPAP
1
AMP
Genome assembly (visualization)
4
hg19
Lab
3
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
4 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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