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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
23
histone
23
histone modification
14
transcription factor
13
narrow histone mark
10
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
15
August, 2017
December, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
37
bam
37
bigWig
37
fastq
35
bed narrowPeak
23
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
37
Homo sapiens
Biosample type
19
cell line
8
in vitro differentiated cells
6
tissue
4
primary cell
Organ
20
liver
9
pancreas
6
connective tissue
4
epithelium
Project
37
AMP
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
45
inconsistent control read length
inconsistent control run_type
4
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
month_released!
December, 2017
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
HepG2
19
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
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