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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
31
DNA binding
10
DNA accessibility
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
308
November, 2017
210
June, 2019
97
May, 2019
70
October, 2019
69
November, 2018
64
April, 2019
50
December, 2017
45
October, 2018
41
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
286
fastq
281
bam
271
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
22
tissue
18
primary cell
1
in vitro differentiated cells
Organ
17
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
41
AMP
Genome assembly (visualization)
41
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
13
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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