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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
ChIP-seq
Assay category
522
DNA binding
Target of assay
245
transcription factor
180
histone
180
histone modification
108
broad histone mark
94
control
72
narrow histone mark
66
recombinant protein
40
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
508
bam
427
bigWig
406
bed narrowPeak
405
bigBed narrowPeak
320
fastq
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
522
Homo sapiens
Biosample type
311
cell line
197
tissue
14
primary cell
Organ
311
liver
119
brain
56
vasculature
53
blood vessel
21
heart
11
epithelium
7
limb
7
musculature of body
5
artery
5
kidney
2
pancreas
Project
522
AMP
Genome assembly (visualization)
374
GRCh38
374
hg19
Lab
522
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
21
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
522 results
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Clear Filters
ChIP-seq
cell line
HepG2
311
tissue
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
substantia nigra
15
+ See 12 more…
primary cell
kidney epithelial cell
5
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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