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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
81
DNA binding
18
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
60
transcription factor
20
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
3
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
101
fastq
98
bam
90
bigWig
81
bed narrowPeak
75
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
107
Homo sapiens
Biosample type
57
cell line
49
tissue
1
primary cell
Organ
49
liver
18
brain
15
blood
15
bodily fluid
12
pancreas
10
spleen
2
adipose tissue
2
connective tissue
Project
107
AMP
Genome assembly (visualization)
89
GRCh38
80
hg19
Lab
106
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
5
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
41
1
GM12878
15
tissue
brain
15
2
spleen
6
1
1
2
body of pancreas
2
4
2
liver
4
2
pancreas
2
1
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primary cell
pancreatic cell
1
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