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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
59
DNA binding
9
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
56
transcription factor
20
RNA binding protein
16
recombinant protein
3
control
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
384
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
80
April, 2019
75
October, 2018
74
November, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
fastq
73
bam
69
bigWig
64
bed narrowPeak
64
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
74
Homo sapiens
Biosample type
56
cell line
17
tissue
1
primary cell
Organ
48
liver
15
blood
15
bodily fluid
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
74
AMP
Genome assembly (visualization)
68
GRCh38
62
hg19
Lab
74
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
inconsistent control read length
organ_slims!
spleen
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
15
tissue
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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