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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
5
GRO-seq
4
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
5
DNA accessibility
4
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
13
bigWig
6
bam
5
fastq
4
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
24
Homo sapiens
Biosample type
7
cell line
6
primary cell
6
tissue
4
in vitro differentiated cells
1
stem cell
Organ
10
pancreas
7
connective tissue
6
epithelium
1
adipose tissue
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
24
AMP
Genome assembly (visualization)
9
hg19
6
GRCh38
5
hg18
Lab
14
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
24 results
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Clear Filters
MeRIP-seq
GRO-seq
ATAC-seq
total RNA-seq
DNase-seq
cell line
EndoC_BH1
6
GM12878
1
primary cell
osteoblast
1
4
1
tissue
islet of Langerhans
4
adipose tissue
1
skeletal muscle tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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