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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
301
ChIP-seq
89
total RNA-seq
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
301
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
198
histone modification
197
histone
109
broad histone mark
87
narrow histone mark
56
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
693
February, 2021
405
August, 2017
402
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
287
fastq
282
bam
266
bigWig
136
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
35
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
404
Homo sapiens
Biosample type
288
tissue
68
in vitro differentiated cells
55
primary cell
Organ
191
pancreas
124
connective tissue
56
adipose tissue
53
liver
26
epithelium
26
musculature of body
Project
411
AMP
Genome assembly (visualization)
272
hg19
245
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
411 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
48
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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