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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
16
snATAC-seq
5
ATAC-seq
1
Hi-C
Assay category
40
DNA binding
21
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
10
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
46
fastq
45
bam
35
bed narrowPeak
35
bigBed narrowPeak
35
bigWig
2
bed bed3+
Organism
62
Homo sapiens
Biosample type
28
cell line
21
tissue
13
primary cell
Organ
35
blood
35
bodily fluid
19
pancreas
7
spleen
5
epithelium
1
liver
Project
46
AMP
16
T1D
Genome assembly (visualization)
37
GRCh38
37
hg19
Lab
46
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
Hi-C
cell line
GM12878
27
HepG2
1
tissue
islet of Langerhans
6
4
spleen
7
pancreas
4
primary cell
peripheral blood mononuclear cell
8
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
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