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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
19
histone
19
histone modification
10
narrow histone mark
10
transcription factor
9
broad histone mark
3
chromatin remodeller
1
RNA binding protein
1
recombinant protein
Date released
11
December, 2017
9
August, 2017
5
November, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
42
bam
42
bigWig
42
fastq
40
bed narrowPeak
23
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
29
Homo sapiens
Biosample type
11
in vitro differentiated cells
6
cell line
6
tissue
4
primary cell
2
stem cell
Organ
9
pancreas
7
liver
connective tissue
5
epithelium
3
embryo
Project
29
AMP
Genome assembly (visualization)
29
hg19
28
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
37
inconsistent control read length
inconsistent control run_type
3
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
cell line
HepG2
6
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
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