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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
115
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
74
histone modification
73
histone
37
narrow histone mark
36
broad histone mark
28
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
324
November, 2017
307
May, 2021
291
May, 2020
290
August, 2021
261
October, 2019
252
February, 2021
222
August, 2017
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
83
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
214
fastq
210
bam
206
bigWig
95
bed narrowPeak
89
tsv
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
222
Homo sapiens
Biosample type
176
tissue
46
primary cell
Organ
172
pancreas
connective tissue
49
adipose tissue
34
liver
29
epithelium
11
musculature of body
Project
222
AMP
Genome assembly (visualization)
174
hg19
166
GRCh38
Lab
222
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
33
89
1
1
liver
28
1
3
skeletal muscle tissue
7
4
pancreas
7
right lobe of liver
1
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
2
pancreatic acinar cell
1
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