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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
5
MeRIP-seq
Assay category
25
DNA binding
Target of assay
188
histone
188
histone modification
95
broad histone mark
93
narrow histone mark
30
control
29
transcription factor
11
RNA binding protein
5
nucleotide modification
Date released
12
August, 2017
8
May, 2021
5
November, 2020
4
August, 2021
1
October, 2017
Available data
bam
143
fastq
65
tagAlign
23
bigWig
8
bed bed3+
3
tsv
Organism
30
Homo sapiens
Biosample type
15
tissue
7
cell line
5
in vitro differentiated cells
3
primary cell
Organ
11
pancreas
connective tissue
7
liver
5
adipose tissue
3
epithelium
3
musculature of body
1
brain
Project
30
AMP
Genome assembly (visualization)
3
hg19
Lab
13
AMP-T2D consortium
8
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
liver
3
skeletal muscle tissue
3
brain
1
cell line
HepG2
4
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
5
primary cell
CD8-positive, alpha-beta T cell
3
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