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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
46
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
67
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
4
February, 2021
3
February, 2023
Available data
3383
bam
3160
bigWig
1808
bed narrowPeak
1599
tsv
1349
fastq
1033
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
160
Homo sapiens
Biosample type
153
primary cell
7
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
4
connective tissue
Project
153
HPAP
7
AMP
Genome assembly (visualization)
7
hg19
Lab
153
Klaus Kaestner, Upenn
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
organ_slims!
lung
BIOSAMPLE
ASSAY
160 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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