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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
pCHi-C
Assay category
28
DNA accessibility
19
Transcription
5
DNA binding
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
56
Homo sapiens
Biosample type
53
tissue
3
primary cell
Organ
864
pancreas
763
liver
650
connective tissue
479
adipose tissue
450
epithelium
353
heart
272
kidney
249
brain
220
vasculature
217
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
56
musculature of body
41
nerve
34
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
29
hg19
2
GRCh38
Lab
56
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
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