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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
1
Hi-C
Assay category
26
DNA binding
1
3D chromatin structure
Target of assay
15
transcription factor
11
chromatin remodeller
11
histone
11
histone modification
6
RNA binding protein
6
broad histone mark
5
narrow histone mark
1
recombinant protein
Date released
21
November, 2017
5
November, 2018
1
October, 2019
Available data
27
bigWig
26
bam
26
fastq
24
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
1
bed bed3+
1
hdf5
Organism
27
Homo sapiens
Biosample type
27
cell line
17
in vitro differentiated cells
7
tissue
6
primary cell
2
stem cell
Organ
26
liver
1
pancreas
Project
27
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
cell line
HepG2
26
Panc1
1
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