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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
1
Hi-C
Assay category
25
DNA binding
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
10
transcription factor
8
narrow histone mark
7
broad histone mark
2
chromatin remodeller
Date released
11
December, 2017
10
August, 2017
2
February, 2018
2
November, 2017
1
October, 2019
Available data
59
bigWig
58
bam
58
fastq
56
bed narrowPeak
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
11
bed bed3+
1
hdf5
Organism
26
Homo sapiens
Biosample type
17
in vitro differentiated cells
4
primary cell
3
cell line
2
stem cell
Organ
6
connective tissue
5
epithelium
5
pancreas
3
embryo
2
liver
Project
26
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
25
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
cell line
HepG2
2
Panc1
1
stem cell
hESC
2
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