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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
1
Hi-C
Assay category
47
DNA binding
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
21
transcription factor
14
narrow histone mark
13
chromatin remodeller
12
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
18
August, 2017
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
1
October, 2019
Available data
48
bigWig
47
bam
47
fastq
45
bed narrowPeak
33
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
5
bed bed3+
1
hdf5
Organism
47
Homo sapiens
Biosample type
27
cell line
8
in vitro differentiated cells
7
tissue
6
primary cell
Organ
27
liver
11
pancreas
6
connective tissue
4
epithelium
Project
48
AMP
Genome assembly (visualization)
48
hg19
44
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
45
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
cell line
HepG2
26
Panc1
1
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
5
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
2
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