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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
1
Hi-C
Assay category
31
DNA binding
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
11
broad histone mark
10
narrow histone mark
10
transcription factor
2
chromatin remodeller
Date released
17
August, 2017
11
December, 2017
2
February, 2018
1
October, 2018
1
October, 2019
Available data
32
bigWig
31
bam
31
bed narrowPeak
31
fastq
11
bed bed3+
8
bigBed narrowPeak
2
bed broadPeak
2
tagAlign
1
bigBed broadPeak
1
hdf5
Organism
31
Homo sapiens
Biosample type
17
in vitro differentiated cells
6
primary cell
6
tissue
2
stem cell
1
cell line
Organ
liver
11
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
32
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
29
inconsistent control read length
4
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
2
tissue
pancreas
5
body of pancreas
1
stem cell
hESC
2
cell line
Panc1
1
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