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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
1
Hi-C
Assay category
41
DNA binding
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
25
transcription factor
broad histone mark
16
narrow histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
13
August, 2017
6
December, 2017
5
November, 2018
1
February, 2018
1
October, 2018
1
October, 2019
Available data
42
bigWig
41
bam
41
fastq
40
bed narrowPeak
23
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3+
5
tagAlign
1
hdf5
Organism
42
Homo sapiens
Biosample type
21
cell line
12
in vitro differentiated cells
5
primary cell
3
tissue
1
stem cell
Organ
21
liver
7
pancreas
6
connective tissue
5
epithelium
2
embryo
Project
42
AMP
Genome assembly (visualization)
42
hg19
39
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
41
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
Hi-C
cell line
HepG2
20
Panc1
1
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
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primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
body of pancreas
1
liver
1
pancreas
1
stem cell
hESC
1
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