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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
1
Hi-C
Assay category
25
DNA binding
1
3D chromatin structure
Target of assay
histone
33
histone modification
25
transcription factor
17
broad histone mark
16
narrow histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
10
November, 2017
6
August, 2017
5
November, 2018
4
December, 2017
1
October, 2019
Available data
26
bigWig
25
bam
25
bed narrowPeak
25
fastq
15
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
hdf5
Organism
26
Homo sapiens
Biosample type
16
cell line
10
in vitro differentiated cells
Organ
15
liver
6
connective tissue
1
embryo
1
pancreas
Project
26
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
histone
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
cell line
HepG2
15
Panc1
1
in vitro differentiated cells
adipocyte
6
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
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