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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
1
Hi-C
Assay category
11
DNA binding
1
3D chromatin structure
Target of assay
8
chromatin remodeller
8
transcription factor
3
RNA binding protein
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
4
November, 2017
4
November, 2018
3
August, 2017
1
October, 2019
Available data
12
bigWig
11
bam
11
bed narrowPeak
11
bigBed narrowPeak
11
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Organism
11
Homo sapiens
Biosample type
9
cell line
2
primary cell
1
tissue
Organ
8
liver
2
pancreas
Project
12
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
Hi-C
cell line
HepG2
8
Panc1
1
primary cell
skeletal muscle myoblast
2
tissue
pancreas
1
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