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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
31
histone
31
histone modification
20
transcription factor
16
narrow histone mark
15
broad histone mark
8
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
15
November, 2017
11
December, 2017
2
February, 2018
2
November, 2018
1
October, 2018
Available data
47
bam
47
bigWig
47
fastq
45
bed narrowPeak
22
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
47
Homo sapiens
Biosample type
17
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
18
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
47
AMP
Genome assembly (visualization)
47
hg19
44
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
47
inconsistent control read length
4
inconsistent assembly
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
cell line
HepG2
17
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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