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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
21
histone
21
histone modification
12
broad histone mark
12
transcription factor
9
narrow histone mark
4
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
August, 2017
11
December, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
33
bam
33
bigWig
33
fastq
31
bed narrowPeak
18
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
33
Homo sapiens
Biosample type
19
cell line
11
in vitro differentiated cells
2
stem cell
1
tissue
Organ
19
liver
3
embryo
1
epithelium
1
pancreas
Project
33
AMP
Genome assembly (visualization)
33
hg19
30
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
40
inconsistent control read length
inconsistent control run_type
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2017
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
19
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
stem cell
hESC
2
tissue
body of pancreas
1
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