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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
15
transcription factor
13
histone
13
histone modification
11
chromatin remodeller
9
narrow histone mark
6
RNA binding protein
4
broad histone mark
1
recombinant protein
Date released
10
August, 2017
10
November, 2017
5
November, 2018
2
December, 2017
1
October, 2018
Available data
39
bam
39
bigWig
39
fastq
37
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tagAlign
2
bed bed3+
Organism
28
Homo sapiens
Biosample type
in vitro differentiated cells
15
cell line
6
tissue
5
primary cell
2
stem cell
Organ
16
liver
9
pancreas
4
epithelium
Project
28
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
28
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
15
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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