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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
24
histone
24
histone modification
15
transcription factor
14
narrow histone mark
11
chromatin remodeller
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
10
August, 2017
5
November, 2018
2
December, 2017
1
October, 2018
Available data
39
bam
39
bigWig
39
fastq
37
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bed3+
Organism
39
Homo sapiens
Biosample type
26
cell line
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
27
liver
9
pancreas
4
epithelium
Project
39
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
cell line
HepG2
26
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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