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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
20
histone
20
histone modification
15
transcription factor
11
chromatin remodeller
10
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
6
August, 2017
5
November, 2018
2
December, 2017
1
October, 2018
Available data
35
bam
35
bigWig
35
fastq
33
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bed3+
Organism
35
Homo sapiens
Biosample type
26
cell line
in vitro differentiated cells
6
tissue
2
stem cell
1
primary cell
Organ
27
liver
9
pancreas
epithelium
Project
35
AMP
Genome assembly (visualization)
35
hg19
31
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
35
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
26
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
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