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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
25
transcription factor
24
histone
24
histone modification
14
broad histone mark
13
chromatin remodeller
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
19
November, 2017
11
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
49
Homo sapiens
Biosample type
24
cell line
17
in vitro differentiated cells
6
tissue
primary cell
2
stem cell
Organ
25
liver
6
connective tissue
5
pancreas
3
embryo
1
epithelium
Project
49
AMP
Genome assembly (visualization)
49
hg19
47
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
49
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
24
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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