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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
21
transcription factor
19
histone
19
histone modification
13
chromatin remodeller
10
broad histone mark
9
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
11
August, 2017
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
40
bam
40
bigWig
40
fastq
38
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
40
Homo sapiens
Biosample type
26
cell line
8
in vitro differentiated cells
6
tissue
primary cell
Organ
27
liver
6
connective tissue
5
pancreas
Project
40
AMP
Genome assembly (visualization)
40
hg19
36
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
biosample_type!
primary cell
month_released!
December, 2017
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
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