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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
Assay category
44
DNA binding
Target of assay
23
histone
23
histone modification
21
transcription factor
13
chromatin remodeller
13
narrow histone mark
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
16
August, 2017
December, 2017
5
November, 2018
2
February, 2018
October, 2018
Available data
44
bam
44
bigWig
44
fastq
42
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
44
Homo sapiens
Biosample type
26
cell line
8
in vitro differentiated cells
5
primary cell
5
tissue
Organ
27
liver
8
pancreas
6
connective tissue
4
epithelium
Project
44
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
44
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
month_released!
October, 2018
December, 2017
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
liver
1
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