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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
Assay category
42
DNA binding
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
transcription factor
4
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
11
December, 2017
9
August, 2017
2
February, 2018
1
November, 2018
1
October, 2018
Available data
42
bam
42
bigWig
42
fastq
40
bed narrowPeak
23
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
42
Homo sapiens
Biosample type
19
cell line
11
in vitro differentiated cells
6
tissue
4
primary cell
2
stem cell
Organ
20
liver
9
pancreas
connective tissue
5
epithelium
3
embryo
Project
42
AMP
Genome assembly (visualization)
42
hg19
39
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
50
inconsistent control read length
inconsistent control run_type
4
inconsistent assembly
organ_slims!
connective tissue
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
cell line
HepG2
19
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
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