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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
Assay category
43
DNA binding
Target of assay
23
transcription factor
20
histone
20
histone modification
12
chromatin remodeller
11
broad histone mark
9
narrow histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
11
December, 2017
8
August, 2017
5
November, 2018
2
February, 2018
Available data
43
bam
43
bed narrowPeak
43
bigWig
43
fastq
24
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
43
Homo sapiens
Biosample type
22
cell line
17
in vitro differentiated cells
2
stem cell
1
primary cell
1
tissue
Organ
23
liver
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
43
AMP
Genome assembly (visualization)
47
hg19
43
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
43
inconsistent control read length
7
inconsistent control run_type
2
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
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