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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
21
histone
21
histone modification
15
transcription factor
12
narrow histone mark
11
chromatin remodeller
9
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
9
August, 2017
5
November, 2018
1
October, 2018
Available data
36
bam
36
bigWig
36
fastq
34
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
Organism
36
Homo sapiens
Biosample type
26
cell line
6
tissue
4
primary cell
Organ
27
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
36
AMP
Genome assembly (visualization)
36
hg19
32
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
36
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
cell line
HepG2
26
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
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