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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
Assay category
11
DNA binding
Target of assay
23
transcription factor
20
histone
20
histone modification
12
chromatin remodeller
11
narrow histone mark
9
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
7
August, 2017
2
December, 2017
1
February, 2018
1
October, 2018
Available data
16
bam
16
bigWig
16
fastq
15
bed narrowPeak
8
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
5
tagAlign
1
bed bed3+
Organism
11
Homo sapiens
Biosample type
5
primary cell
3
tissue
2
in vitro differentiated cells
1
stem cell
Organ
6
pancreas
5
epithelium
1
embryo
1
liver
Project
11
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
body of pancreas
1
liver
1
pancreas
1
in vitro differentiated cells
Hepatic endoderm
1
definitive endodermal cell
1
stem cell
hESC
1
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